更新 'workflow.wdl'

workflow.wdl

@@ -18,7 +18,7 @@ workflow {{ project_name }} {
     String disk_size
     String docker_annotsv
 
-	call manta_calling.manta_calling as manta_calling{
+	call manta_calling.manta_calling as manta_calling_SV{
 		input:
 			tumor_bam = tumor_bam,
 			tumor_bam_bai = tumor_bam_bai,
@@ -36,7 +36,7 @@ workflow {{ project_name }} {
 	call AnnotSV.AnnotSV as manta_AnnotSV{
 		input:
                 sample=sample_id,
-                somatic_vcf= manta_calling.manta_indel_vcf,
+                somatic_vcf= manta_calling_SV.manta_indel_vcf,
                 annotsv_database=annotsv_database,
                 docker=docker_annotsv,
                 cluster_config=cluster_config,