meng
/
Delly_pipeline
Watch 1
Star 0
Fork 0
Code Issues 0 Pull Requests 0 Releases 0 Wiki Activity
Delly pipeline for somatic SV
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
20 Commits
1 Branch
Branch: master
Branches Tags
${ item.name }
Create branch ${ searchTerm }
from 'master'
${ noResults }
Delly_pipeline/defaults

11 lines
649B
Raw Permalink Blame History 

  1.  {

  2.         "ref_fasta":"GRCh38.d1.vd1.fa",

  3.         "ref_fasta_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/",

  4.         "cluster_config":"OnDemand bcs.es.c.8xlarge img-ubuntu-vpc",

  5.         "disk_size":"600",

  6.         "docker_delly":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/delly:1.1.6",

  7. 		"annotsv_database":"oss://hcc1395/reference_genome/AnnotSV/",

  8.         "docker_annotsv":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/annotsv:3.1.3",

  9.         "baseline":"oss://hcc1395/reference_genome/MSIsensor/hg38_reference.list_baseline",

  10.         "docker_MSIsensor":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/msisensor-pro:1.2.0"

  11.     }