Delly pipeline for somatic SV
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  1. {
  2. "ref_fasta":"GRCh38.d1.vd1.fa",
  3. "ref_fasta_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/",
  4. "cluster_config":"OnDemand bcs.es.c.8xlarge img-ubuntu-vpc",
  5. "disk_size":"600",
  6. "docker_delly":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/delly:1.1.6",
  7. "annotsv_database":"oss://hcc1395/reference_genome/AnnotSV/",
  8. "docker_annotsv":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/annotsv:3.1.3",
  9. "baseline":"oss://hcc1395/reference_genome/MSIsensor/hg38_reference.list_baseline",
  10. "docker_MSIsensor":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/msisensor-pro:1.2.0"
  11. }