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tasks/CNVkit.wdl
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| @@ -20,7 +20,7 @@ task cnvkit{ | |||
| cnvkit.py batch ${tumor_bam} \ | |||
| -n ${normal_bam} \ | |||
| -m wgs \ | |||
| -f ${fasta} \ | |||
| -f ${ref_dir}/${fasta} \ | |||
| --annotate ${ref_flat} | |||
| cnvkit.py scatter ${sample}.cnr \ | |||
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