1 changed files with 1 additions and 1 deletions
+ 1
- 1
tasks/CNVkit.wdl
View File
| cnvkit.py batch ${tumor_bam} \ | cnvkit.py batch ${tumor_bam} \ | ||||
| -n ${normal_bam} \ | -n ${normal_bam} \ | ||||
| -m wgs \ | -m wgs \ | ||||
| -f ${fasta} \ | |||||
| -f ${ref_dir}/${fasta} \ | |||||
| --annotate ${ref_flat} | --annotate ${ref_flat} | ||||
| cnvkit.py scatter ${sample}.cnr \ | cnvkit.py scatter ${sample}.cnr \ |
Loading…