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tasks/hisat2.wdl
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| command { | command { | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| hisat2 -t -p $nt -x ${idx}/${idx_prefix} -1 ${read_1P} -2 ${read_2P} -S ${base}.sam --un-conc-gz ${base}_un.fq.gz | |||||
| hisat2 -t -p $nt -x ${idx}/${idx_prefix} -1 ${read_1P} -2 ${read_2P} -S ${base}.sam --un-conc-gz ${base}_un.fq.gz | |||||
| } | } | ||||
| runtime { | runtime { |
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