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tasks/hisat2.wdl
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| @@ -9,7 +9,7 @@ task hisat2 { | |||
| command { | |||
| nt=$(nproc) | |||
| hisat2 -t -p $nt -x ${idx}/${idx_prefix} -1 ${read_1P} -2 ${read_2P} -S ${base}.sam --un-conc-gz ${base}_un.fq.gz | |||
| hisat2 -t -p $nt -x ${idx}/${idx_prefix} -1 ${read_1P} -2 ${read_2P} -S ${base}.sam --un-conc-gz ${base}_un.fq.gz | |||
| } | |||
| runtime { | |||
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