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defaults
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| "hisat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc", | "hisat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc", | ||||
| "idx_prefix": "genome_snp_tran", | "idx_prefix": "genome_snp_tran", | ||||
| "idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/", | "idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/", | ||||
| "fasta": "GRCh38.d1.vd1.fa", | |||||
| "pen_cansplice":"0", | "pen_cansplice":"0", | ||||
| "pen_noncansplice":"3", | "pen_noncansplice":"3", | ||||
| "pen_intronlen":"G,-8,1", | "pen_intronlen":"G,-8,1", |
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inputs
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| "{{ project_name }}.screen_ref_dir": "{{ screen_ref_dir }}", | "{{ project_name }}.screen_ref_dir": "{{ screen_ref_dir }}", | ||||
| "{{ project_name }}.fastq_screen_conf": "{{ fastq_screen_conf }}", | "{{ project_name }}.fastq_screen_conf": "{{ fastq_screen_conf }}", | ||||
| "{{ project_name }}.fastqscreen_disk_size": "{{ fastqscreen_disk_size }}", | "{{ project_name }}.fastqscreen_disk_size": "{{ fastqscreen_disk_size }}", | ||||
| "{{ project_name }}.ref_dir": "{{ ref_dir }}", | |||||
| "{{ project_name }}.multiqc_cluster_config": "{{ multiqc_cluster_config }}", | "{{ project_name }}.multiqc_cluster_config": "{{ multiqc_cluster_config }}", | ||||
| "{{ project_name }}.multiqc_docker": "{{ multiqc_docker }}", | "{{ project_name }}.multiqc_docker": "{{ multiqc_docker }}", | ||||
| "{{ project_name }}.multiqc_disk_size": "{{ multiqc_disk_size }}", | "{{ project_name }}.multiqc_disk_size": "{{ multiqc_disk_size }}", |
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