add fasta

defaults

@@ -21,6 +21,7 @@
     "hisat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
     "idx_prefix": "genome_snp_tran",
     "idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/",
+    "fasta": "GRCh38.d1.vd1.fa",
     "pen_cansplice":"0",
     "pen_noncansplice":"3",
     "pen_intronlen":"G,-8,1",

inputs

@@ -56,7 +56,6 @@
 	"{{ project_name }}.screen_ref_dir": "{{ screen_ref_dir }}",
 	"{{ project_name }}.fastq_screen_conf": "{{ fastq_screen_conf }}",
 	"{{ project_name }}.fastqscreen_disk_size": "{{ fastqscreen_disk_size }}",
-	"{{ project_name }}.ref_dir": "{{ ref_dir }}",
 	"{{ project_name }}.multiqc_cluster_config": "{{ multiqc_cluster_config }}",
 	"{{ project_name }}.multiqc_docker": "{{ multiqc_docker }}",
 	"{{ project_name }}.multiqc_disk_size": "{{ multiqc_disk_size }}",