1 changed files with 5 additions and 5 deletions
+ 5
- 5
tasks/access.wdl
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| String cluster_config | String cluster_config | ||||
| String disk_size | String disk_size | ||||
| command << | |||||
| #if [ ${method}=="amplicon" ]; then | |||||
| command <<< | |||||
| if [ ${method}=="amplicon" ]; then | |||||
| cp ${bed} access-mappable.bed | cp ${bed} access-mappable.bed | ||||
| #else | |||||
| # cnvkit.py access -s ${min_gap_size} -o access-mappable.bed ${fasta} | |||||
| #fi | |||||
| else | |||||
| cnvkit.py access -s ${min_gap_size} -o access-mappable.bed ${fasta} | |||||
| fi | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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