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tasks/batch.wdl
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| # must exist parameters | # must exist parameters | ||||
| cp ${fasta} /cromwell_root/tmp/cnvkit/hg_ref.fa | cp ${fasta} /cromwell_root/tmp/cnvkit/hg_ref.fa | ||||
| cp ${faidx} /cromwell_root/tmp/cnvkit/hg_ref.fai | cp ${faidx} /cromwell_root/tmp/cnvkit/hg_ref.fai | ||||
| cp ${bed} /cromwell_root/tmp/cnvkit/target.bed | |||||
| cp ${access_bed} /cromwell_root/tmp/cnvkit/access-mappable.bed | cp ${access_bed} /cromwell_root/tmp/cnvkit/access-mappable.bed | ||||
| # optional parameters | # optional parameters |
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