@@ -41,7 +41,9 @@ task batch { | |||
--fasta hg_ref.fa ${reference_opt} \ | |||
--output-reference ${sample_id}.reference.cnn \ | |||
--output-dir ./results/ \ | |||
--drop-low-coverage --diagram --scatter | |||
--drop-low-coverage \ | |||
--drop-outliers \ | |||
--diagram --scatter | |||
cp ${sample_id}.reference.cnn ~/${sample_id}.reference.cnn | |||