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更新 'tasks/batch.wdl'

master
liuruimei 3 years ago
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c8b5f068b2
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      tasks/batch.wdl

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tasks/batch.wdl View File

@@ -36,7 +36,7 @@ task batch {
cd /cromwell_root/tmp/cnvkit
mkdir results
cnvkit.py batch -p $nt ${sep=' ' tumor_bam} --normal ${sep=' ' normal_bam} \
--method ${method} --segment-method ${segment_method} \
--method ${method} \
${access_opt} ${annotate_opt} \
--fasta hg_ref.fa ${reference_opt} \
--output-reference ${sample_id}.reference.cnn \

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