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linzipeng 4 years ago
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      README.md

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README.md View File

@@ -23,7 +23,7 @@

```bash
$ source activate choppy-pipe-0.3.8.dev0
$ choppy install linzipeng/sjzp
$ choppy install linzipeng/Target-Seq-FUSCC
$ choppy apps
```

@@ -35,7 +35,7 @@ $ choppy apps

```bash
# Generate samples file
$ choppy samples linzipeng/sjzp-target-latest --out samples.csv
$ choppy samples linzipeng/Target-Seq-FUSCC-latest --out samples.csv
```

`sample.csv` 包含以下几个需要填写的参数:
@@ -59,7 +59,7 @@ tumor_fastq_1,tumor_fastq_2,normal_fastq_1,normal_fastq_1,sample_name,cluster,sa
在配置好`samples.csv` 文件后,使用以下命令可以提交计算任务:

```bash
$ choppy batch linzipeng/sjzp-target-latest sample.csv --project-name Your_project_name
$ choppy batch linzipeng/Target-Seq-FUSCC-latest sample.csv --project-name Your_project_name
```

提交成功后,即可在工作目录下找到生成的目录名为Your_project_name,里面包含了本次提交任务的所有样本信息。

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