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@@ -23,7 +23,7 @@ |
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```bash |
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$ source activate choppy-pipe-0.3.8.dev0 |
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$ choppy install linzipeng/sjzp |
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$ choppy install linzipeng/Target-Seq-FUSCC |
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$ choppy apps |
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``` |
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@@ -35,7 +35,7 @@ $ choppy apps |
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```bash |
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# Generate samples file |
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$ choppy samples linzipeng/sjzp-target-latest --out samples.csv |
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$ choppy samples linzipeng/Target-Seq-FUSCC-latest --out samples.csv |
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``` |
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`sample.csv` 包含以下几个需要填写的参数: |
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@@ -59,7 +59,7 @@ tumor_fastq_1,tumor_fastq_2,normal_fastq_1,normal_fastq_1,sample_name,cluster,sa |
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在配置好`samples.csv` 文件后,使用以下命令可以提交计算任务: |
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```bash |
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$ choppy batch linzipeng/sjzp-target-latest sample.csv --project-name Your_project_name |
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$ choppy batch linzipeng/Target-Seq-FUSCC-latest sample.csv --project-name Your_project_name |
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``` |
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提交成功后,即可在工作目录下找到生成的目录名为Your_project_name,里面包含了本次提交任务的所有样本信息。 |