debug

inputs

@@ -12,7 +12,9 @@
   "{{ project_name }}.disk_size": "{{ 200 }}", 
   "{{ project_name }}.hardfiltration_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",
   "{{ project_name }}.annovar_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2018.04",
-  "{{ project_name }}.recaled_bam_file": "{{ recaled_bam }}",
+  "{{ project_name }}.recaled_bam": "{{ recaled_bam }}",
   "{{ project_name }}.database": "oss://chinese-quartet/quartet-storage-data/reference_data/annovar_hg38/",
   "{{ project_name }}.recaled_bam_index": "{{ recaled_bam_index }}"
-}
+}
+
+

workflow.wdl

@@ -20,6 +20,8 @@ workflow {{ project_name }} {
 	File recaled_bam
 	File database
 	File recaled_bam_index
+	String hardfiltration_docker
+	String annovar_docker
 
 	call Haplotyper.Haplotyper as Haplotyper {
 		input: