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tags/v1.0
linzipeng 5 jaren geleden
bovenliggende
commit
bc9b1ddcef
2 gewijzigde bestanden met toevoegingen van 6 en 2 verwijderingen
  1. +4
    -2
      inputs
  2. +2
    -0
      workflow.wdl

+ 4
- 2
inputs Bestand weergeven

"{{ project_name }}.disk_size": "{{ 200 }}", "{{ project_name }}.disk_size": "{{ 200 }}",
"{{ project_name }}.hardfiltration_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01", "{{ project_name }}.hardfiltration_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",
"{{ project_name }}.annovar_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2018.04", "{{ project_name }}.annovar_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2018.04",
"{{ project_name }}.recaled_bam_file": "{{ recaled_bam }}",
"{{ project_name }}.recaled_bam": "{{ recaled_bam }}",
"{{ project_name }}.database": "oss://chinese-quartet/quartet-storage-data/reference_data/annovar_hg38/", "{{ project_name }}.database": "oss://chinese-quartet/quartet-storage-data/reference_data/annovar_hg38/",
"{{ project_name }}.recaled_bam_index": "{{ recaled_bam_index }}" "{{ project_name }}.recaled_bam_index": "{{ recaled_bam_index }}"
}
}



+ 2
- 0
workflow.wdl Bestand weergeven

File recaled_bam File recaled_bam
File database File database
File recaled_bam_index File recaled_bam_index
String hardfiltration_docker
String annovar_docker


call Haplotyper.Haplotyper as Haplotyper { call Haplotyper.Haplotyper as Haplotyper {
input: input:

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