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revised fastqcreen

tags/v0.1.0
stead99 5 年之前
父節點
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c9056b3f1d
共有 2 個檔案被更改,包括 5 行新增4 行删除
  1. +3
    -2
      tasks/fastqc.wdl
  2. +2
    -2
      tasks/fastqscreen.wdl

+ 3
- 2
tasks/fastqc.wdl 查看文件

File read1 File read1
File read2 File read2
String docker String docker
String cluster_config
String docker
String cluster
String disk_size String disk_size


command <<< command <<<


runtime { runtime {
docker:docker docker:docker
cluster: cluster_config
cluster: cluster
systemDisk: "cloud_ssd 40" systemDisk: "cloud_ssd 40"
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
} }

+ 2
- 2
tasks/fastqscreen.wdl 查看文件

String read1name = basename(read1,".fastq.gz") String read1name = basename(read1,".fastq.gz")
String read2name = basename(read2,".fastq.gz") String read2name = basename(read2,".fastq.gz")
String docker String docker
String cluster_config
String cluster
String disk_size String disk_size


command <<< command <<<


runtime { runtime {
docker:docker docker:docker
cluster: cluster_config
cluster: cluster
systemDisk: "cloud_ssd 40" systemDisk: "cloud_ssd 40"
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
} }

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