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String read1name = basename(read1,".fastq.gz") |
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String read1name = basename(read1,".fastq.gz") |
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String read2name = basename(read2,".fastq.gz") |
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String read2name = basename(read2,".fastq.gz") |
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String docker |
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String docker |
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String cluster_config |
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String cluster |
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String disk_size |
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String disk_size |
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command <<< |
|
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command <<< |
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runtime { |
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runtime { |
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docker:docker |
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docker:docker |
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cluster: cluster_config |
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cluster: cluster |
|
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systemDisk: "cloud_ssd 40" |
|
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systemDisk: "cloud_ssd 40" |
|
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dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" |
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dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" |
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} |
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} |