@@ -2,7 +2,8 @@ task fastqc { | |||
File read1 | |||
File read2 | |||
String docker | |||
String cluster_config | |||
String docker | |||
String cluster | |||
String disk_size | |||
command <<< | |||
@@ -15,7 +16,7 @@ task fastqc { | |||
runtime { | |||
docker:docker | |||
cluster: cluster_config | |||
cluster: cluster | |||
systemDisk: "cloud_ssd 40" | |||
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | |||
} |
@@ -6,7 +6,7 @@ task fastqscreen { | |||
String read1name = basename(read1,".fastq.gz") | |||
String read2name = basename(read2,".fastq.gz") | |||
String docker | |||
String cluster_config | |||
String cluster | |||
String disk_size | |||
command <<< | |||
@@ -21,7 +21,7 @@ task fastqscreen { | |||
runtime { | |||
docker:docker | |||
cluster: cluster_config | |||
cluster: cluster | |||
systemDisk: "cloud_ssd 40" | |||
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | |||
} |