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revised fastqcreen

tags/v0.1.0
stead99 hace 5 años
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commit
c9056b3f1d
Se han modificado 2 ficheros con 5 adiciones y 4 borrados
  1. +3
    -2
      tasks/fastqc.wdl
  2. +2
    -2
      tasks/fastqscreen.wdl

+ 3
- 2
tasks/fastqc.wdl Ver fichero

@@ -2,7 +2,8 @@ task fastqc {
File read1
File read2
String docker
String cluster_config
String docker
String cluster
String disk_size

command <<<
@@ -15,7 +16,7 @@ task fastqc {

runtime {
docker:docker
cluster: cluster_config
cluster: cluster
systemDisk: "cloud_ssd 40"
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
}

+ 2
- 2
tasks/fastqscreen.wdl Ver fichero

@@ -6,7 +6,7 @@ task fastqscreen {
String read1name = basename(read1,".fastq.gz")
String read2name = basename(read2,".fastq.gz")
String docker
String cluster_config
String cluster
String disk_size

command <<<
@@ -21,7 +21,7 @@ task fastqscreen {

runtime {
docker:docker
cluster: cluster_config
cluster: cluster
systemDisk: "cloud_ssd 40"
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
}

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