@@ -6,9 +6,9 @@ task ballgown { | |||
String cluster | |||
command <<< | |||
#mkdir /cromwell_root/tmp/ | |||
#cp -r ${ballgown} /cromwell_root/tmp/ | |||
Rscript /usr/bin/ballgown.R ${ballgown} ${base}.txt | |||
mkdir /cromwell_root/tmp/ | |||
cp -r ${sep=" " ballgown} /cromwell_root/tmp/ballgown | |||
Rscript /usr/bin/ballgown.R /cromwell_root/tmp/ballgown/${base} ${base}.txt | |||
>>> | |||
runtime { |