2 changed files with 2 additions and 4 deletions
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samples.csv
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| hisat2_cluster,samtools_cluster,stringtie_docker,ballgown_cluster,read1,idx_prefix,ballgown_docker,idx,gtf,sample_id,hisat2_docker,stringtie_cluster,samtools_docker,read2 | |||||
| ,,,,oss://pgx-result/shangjun/test_data/test_R1.fq.gz,,,,,test,,,,oss://pgx-result/shangjun/test_data/test_R2.fq.gz |
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workflow.wdl
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| cluster = stringtie_cluster, | cluster = stringtie_cluster, | ||||
| gtf = gtf, | gtf = gtf, | ||||
| bam = samtools.out_bam, | bam = samtools.out_bam, | ||||
| disk_size= disk_size | |||||
| disk_size = disk_size | |||||
| } | } | ||||
| call ballgown.ballgown as ballgown { | call ballgown.ballgown as ballgown { | ||||
| cluster = ballgown_cluster, | cluster = ballgown_cluster, | ||||
| ballgown = stringtie.ballgown, | ballgown = stringtie.ballgown, | ||||
| gene_abundance = stringtie.gene_abundance, | gene_abundance = stringtie.gene_abundance, | ||||
| disk_size= disk_size | |||||
| disk_size = disk_size | |||||
| } | } | ||||
| } | } |
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