@@ -1,2 +0,0 @@ | |||
hisat2_cluster,samtools_cluster,stringtie_docker,ballgown_cluster,read1,idx_prefix,ballgown_docker,idx,gtf,sample_id,hisat2_docker,stringtie_cluster,samtools_docker,read2 | |||
,,,,oss://pgx-result/shangjun/test_data/test_R1.fq.gz,,,,,test,,,,oss://pgx-result/shangjun/test_data/test_R2.fq.gz |
@@ -87,7 +87,7 @@ workflow {{ project_name }} { | |||
cluster = stringtie_cluster, | |||
gtf = gtf, | |||
bam = samtools.out_bam, | |||
disk_size= disk_size | |||
disk_size = disk_size | |||
} | |||
call ballgown.ballgown as ballgown { | |||
@@ -96,6 +96,6 @@ workflow {{ project_name }} { | |||
cluster = ballgown_cluster, | |||
ballgown = stringtie.ballgown, | |||
gene_abundance = stringtie.gene_abundance, | |||
disk_size= disk_size | |||
disk_size = disk_size | |||
} | |||
} |