"{{ project_name }}.raw_name": "{{ raw_name }}", | "{{ project_name }}.raw_name": "{{ raw_name }}", | ||||
"{{ project_name }}.new_name": "{{ new_name }}", | "{{ project_name }}.new_name": "{{ new_name }}", | ||||
"{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", | "{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", | ||||
"{{ project_name }}.disk_size": "{{ disk_size }}" | |||||
"{{ project_name }}.disk_size": "{{ disk_size }}", | |||||
"{{ project_name }}.cluster_config": "{{ cluster if cluster != '' else 'OnDemand bcs.sn1ne.large img-ubuntu-vpc' }}" | |||||
} | } |
String new_name | String new_name | ||||
String disk_size | String disk_size | ||||
String docker | String docker | ||||
String cluster_config | |||||
command <<< | command <<< | ||||
cat ${raw_name}/clean/*_1.fq.gz > ${new_name}_1.fq.gz | cat ${raw_name}/clean/*_1.fq.gz > ${new_name}_1.fq.gz |
String disk_size | String disk_size | ||||
File raw_name | File raw_name | ||||
String new_name | String new_name | ||||
String cluster_config | |||||
call cat_rename.cat_rename as cat_rename { | call cat_rename.cat_rename as cat_rename { | ||||
input: | input: | ||||
new_name=new_name, | new_name=new_name, | ||||
docker=docker, | docker=docker, | ||||
disk_size=disk_size | disk_size=disk_size | ||||
cluster_config=cluster_config | |||||
} | } | ||||
} | } |