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stead99 5 年之前
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共有 3 個檔案被更改,包括 5 行新增1 行删除
  1. +2
    -1
      inputs
  2. +1
    -0
      tasks/cat_rename.wdl
  3. +2
    -0
      workflow.wdl

+ 2
- 1
inputs 查看文件

@@ -2,5 +2,6 @@
"{{ project_name }}.raw_name": "{{ raw_name }}",
"{{ project_name }}.new_name": "{{ new_name }}",
"{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }}.disk_size": "{{ disk_size }}"
"{{ project_name }}.disk_size": "{{ disk_size }}",
"{{ project_name }}.cluster_config": "{{ cluster if cluster != '' else 'OnDemand bcs.sn1ne.large img-ubuntu-vpc' }}"
}

+ 1
- 0
tasks/cat_rename.wdl 查看文件

@@ -3,6 +3,7 @@ task cat_rename {
String new_name
String disk_size
String docker
String cluster_config

command <<<
cat ${raw_name}/clean/*_1.fq.gz > ${new_name}_1.fq.gz

+ 2
- 0
workflow.wdl 查看文件

@@ -5,6 +5,7 @@ workflow {{ project_name }} {
String disk_size
File raw_name
String new_name
String cluster_config

call cat_rename.cat_rename as cat_rename {
input:
@@ -12,5 +13,6 @@ workflow {{ project_name }} {
new_name=new_name,
docker=docker,
disk_size=disk_size
cluster_config=cluster_config
}
}

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