@@ -2,5 +2,6 @@ | |||
"{{ project_name }}.raw_name": "{{ raw_name }}", | |||
"{{ project_name }}.new_name": "{{ new_name }}", | |||
"{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", | |||
"{{ project_name }}.disk_size": "{{ disk_size }}" | |||
"{{ project_name }}.disk_size": "{{ disk_size }}", | |||
"{{ project_name }}.cluster_config": "{{ cluster if cluster != '' else 'OnDemand bcs.sn1ne.large img-ubuntu-vpc' }}" | |||
} |
@@ -3,6 +3,7 @@ task cat_rename { | |||
String new_name | |||
String disk_size | |||
String docker | |||
String cluster_config | |||
command <<< | |||
cat ${raw_name}/clean/*_1.fq.gz > ${new_name}_1.fq.gz |
@@ -5,6 +5,7 @@ workflow {{ project_name }} { | |||
String disk_size | |||
File raw_name | |||
String new_name | |||
String cluster_config | |||
call cat_rename.cat_rename as cat_rename { | |||
input: | |||
@@ -12,5 +13,6 @@ workflow {{ project_name }} { | |||
new_name=new_name, | |||
docker=docker, | |||
disk_size=disk_size | |||
cluster_config=cluster_config | |||
} | |||
} |