2 changed files with 2 additions and 5 deletions
+ 1
- 2
tasks/cat_rename.wdl
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| task cat_rename { | task cat_rename { | ||||
| File raw_name | File raw_name | ||||
| String new_name | String new_name | ||||
| String cluster_config | |||||
| String disk_size | String disk_size | ||||
| String docker | |||||
| command <<< | command <<< | ||||
| cat ${raw_name}/clean/*_1.fq.gz > ${new_name}_1.fq.gz | cat ${raw_name}/clean/*_1.fq.gz > ${new_name}_1.fq.gz | ||||
| runtime { | runtime { | ||||
| docker:docker | docker:docker | ||||
| cluster:cluster_config | |||||
| systemDisk:"cloud_ssd 40" | systemDisk:"cloud_ssd 40" | ||||
| dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/" | dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/" | ||||
| } | } |
+ 1
- 3
workflow.wdl
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| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| String docker | String docker | ||||
| String cluster_config | |||||
| String disk_size | String disk_size | ||||
| File raw_name | File raw_name | ||||
| String new_name | String new_name | ||||
| raw_name=raw_name, | raw_name=raw_name, | ||||
| new_name=new_name, | new_name=new_name, | ||||
| docker=docker, | docker=docker, | ||||
| disk_size=disk_size, | |||||
| cluster_config=cluster_config | |||||
| disk_size=disk_size | |||||
| } | } | ||||
| } | } |
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