@@ -1,8 +1,8 @@ | |||
task cat_rename { | |||
File raw_name | |||
String new_name | |||
String cluster_config | |||
String disk_size | |||
String docker | |||
command <<< | |||
cat ${raw_name}/clean/*_1.fq.gz > ${new_name}_1.fq.gz | |||
@@ -11,7 +11,6 @@ task cat_rename { | |||
runtime { | |||
docker:docker | |||
cluster:cluster_config | |||
systemDisk:"cloud_ssd 40" | |||
dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/" | |||
} |
@@ -2,7 +2,6 @@ import "./tasks/cat_rename.wdl" as cat_rename | |||
workflow {{ project_name }} { | |||
String docker | |||
String cluster_config | |||
String disk_size | |||
File raw_name | |||
String new_name | |||
@@ -12,7 +11,6 @@ workflow {{ project_name }} { | |||
raw_name=raw_name, | |||
new_name=new_name, | |||
docker=docker, | |||
disk_size=disk_size, | |||
cluster_config=cluster_config | |||
disk_size=disk_size | |||
} | |||
} |