4 changed files with 16 additions and 4 deletions
+ 4
- 1
tasks/cufflinks.wdl
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| cufflinks ${gtf} -p 24 -o ${baseout} ${bam} | cufflinks ${gtf} -p 24 -o ${baseout} ${bam} | ||||
| runtime { | runtime { | ||||
| dockerTag: docker | |||||
| docker: docker | |||||
| cluster: cluster | |||||
| systemDisk: "cloud_ssd 40" | |||||
| dataDisk: "cloud_ssd 200 /cromwell_root/" | |||||
| } | } | ||||
| output { | output { |
+ 4
- 1
tasks/fastqc.wdl
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| } | } | ||||
| runtime { | runtime { | ||||
| dockerTag: docker | |||||
| docker: docker | |||||
| cluster: cluster | |||||
| systemDisk: "cloud_ssd 40" | |||||
| dataDisk: "cloud_ssd 200 /cromwell_root/" | |||||
| } | } | ||||
| # 输入文件后缀必须为.fq.gz或者.fastq.gz | # 输入文件后缀必须为.fq.gz或者.fastq.gz |
+ 4
- 1
tasks/tophat2.wdl
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| } | } | ||||
| runtime { | runtime { | ||||
| dockerTag: docker | |||||
| docker: docker | |||||
| cluster: cluster | |||||
| systemDisk: "cloud_ssd 40" | |||||
| dataDisk: "cloud_ssd 200 /cromwell_root/" | |||||
| } | } | ||||
| output { | output { |
+ 4
- 1
tasks/trimmomatic.wdl
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| } | } | ||||
| runtime { | runtime { | ||||
| dockerTag: docker | |||||
| docker: docker | |||||
| cluster: cluster | |||||
| systemDisk: "cloud_ssd 40" | |||||
| dataDisk: "cloud_ssd 200 /cromwell_root/" | |||||
| } | } | ||||
| output { | output { |
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