add-cluster

tasks/cufflinks.wdl

@@ -11,7 +11,10 @@ task cufflinks {
       cufflinks ${gtf} -p 24 -o ${baseout} ${bam}
 
     runtime {
-      dockerTag: docker
+      docker: docker 
+		cluster: cluster
+		systemDisk: "cloud_ssd 40"
+		dataDisk: "cloud_ssd 200 /cromwell_root/"
     }
     
     output {

tasks/fastqc.wdl

@@ -9,7 +9,10 @@ task qc {
 	}
 
 	runtime {
-		dockerTag: docker
+		docker: docker 
+		cluster: cluster
+		systemDisk: "cloud_ssd 40"
+		dataDisk: "cloud_ssd 200 /cromwell_root/"
 	}
 
 	# 输入文件后缀必须为.fq.gz或者.fastq.gz

tasks/tophat2.wdl

@@ -13,7 +13,10 @@ task tophat2 {
    }
    
    runtime { 
-      dockerTag: docker 
+      docker: docker 
+		cluster: cluster
+		systemDisk: "cloud_ssd 40"
+		dataDisk: "cloud_ssd 200 /cromwell_root/"
    }
 
    output {

tasks/trimmomatic.wdl

@@ -12,7 +12,10 @@ task trimmomatic {
 	}
 
 	runtime {
-		dockerTag: docker
+		docker: docker 
+		cluster: cluster
+		systemDisk: "cloud_ssd 40"
+		dataDisk: "cloud_ssd 200 /cromwell_root/"
 	}
 
 	output {