@@ -1,7 +1,7 @@ | |||
task rmats { | |||
String sample_id | |||
File b1_txt | |||
File b2_txt | |||
File bam1 | |||
File bam2 | |||
File reference_gtf_file | |||
@@ -17,9 +17,12 @@ task rmats { | |||
mkdir -p ${sample_id}/output | |||
mkdir -p ${sample_id}/tmp_output | |||
### 命令行无需修改 | |||
python /usr/local/bin/rmats.py --b1 ${b1_txt} \ | |||
--b2 ${b2_txt} \ | |||
echo ${bam1} > b1_txt | |||
echo ${bam2} > b2_txt | |||
python /usr/local/bin/rmats.py --b1 b1_txt \ | |||
--b2 b2_txt \ | |||
--gtf ${reference_gtf_file} \ | |||
-t paired \ | |||
--readLength 150 \ |