1 changed files with 4 additions and 6 deletions
+ 4
- 6
workflow.wdl
View File
| @@ -3,10 +3,8 @@ import "./tasks/rmats.wdl" as rmats | |||
| workflow {{ project_name }} { | |||
| String sample_id | |||
| File b1_txt_file | |||
| Array[Array[File]] b1_txt = read_csv(b1_txt_file) | |||
| File b2_txt_file | |||
| Array[Array[File]] b2_txt = read_csv(b2_txt_file) | |||
| File b1_txt | |||
| File b2_txt | |||
| File reference_gtf_file | |||
| @@ -16,8 +14,8 @@ workflow {{ project_name }} { | |||
| call rmats.rmats as rmats { | |||
| input: | |||
| b1_txt_file = b1_txt_file, | |||
| b2_txt_file = b2_txt_file, | |||
| b1_txt = b1_txt, | |||
| b2_txt = b2_txt, | |||
| reference_gtf_file = reference_gtf_file, | |||
| sample_id = sample_id, | |||
| docker = rmats_docker, | |||
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