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tasks/rmats.wdl
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| File bam1 | File bam1 | ||||
| File bam2 | File bam2 | ||||
| File reference_gtf_file | File reference_gtf_file | ||||
| String CSTAT | |||||
| String docker | String docker | ||||
| -t paired \ | -t paired \ | ||||
| --readLength 150 \ | --readLength 150 \ | ||||
| --nthread 4 \ | --nthread 4 \ | ||||
| --cstat ${CSTAT} | |||||
| --od ${sample_id}/output \ | --od ${sample_id}/output \ | ||||
| --tmp ${sample_id}/tmp_output | --tmp ${sample_id}/tmp_output | ||||
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