File bam1 | File bam1 | ||||
File bam2 | File bam2 | ||||
File reference_gtf_file | File reference_gtf_file | ||||
String CSTAT | |||||
String docker | String docker | ||||
-t paired \ | -t paired \ | ||||
--readLength 150 \ | --readLength 150 \ | ||||
--nthread 4 \ | --nthread 4 \ | ||||
--cstat ${CSTAT} | |||||
--od ${sample_id}/output \ | --od ${sample_id}/output \ | ||||
--tmp ${sample_id}/tmp_output | --tmp ${sample_id}/tmp_output | ||||