--nthread 4 \ | --nthread 4 \ | ||||
--od ${sample_id}/output \ | --od ${sample_id}/output \ | ||||
--tmp ${sample_id}/tmp_output | --tmp ${sample_id}/tmp_output | ||||
find . -depth > fileList.txt | |||||
>>> | >>> | ||||
runtime { | runtime { | ||||
} | } | ||||
output { | output { | ||||
File fileList = "fileList.txt" | |||||
Array[File] AS_txt = glob("${sample_id}/output/*.txt") | Array[File] AS_txt = glob("${sample_id}/output/*.txt") | ||||
Array[File] tmp = glob("${sample_id}/output/tmp/*") | Array[File] tmp = glob("${sample_id}/output/tmp/*") | ||||
} | } |