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call Align.AlignToBothStrand as Align2Hg38 { |
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call Align.AlignToBothStrand as Align2Hg38 { |
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input: |
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input: |
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sample_id=sample_id, |
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sample_id=sample_id, |
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in_fastq=Align2piRNA.out_fastq, |
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in_fastq=ReadFilter.out_fastq, |
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refname="Hg38",dir_index=dir_index_hg38,prefix_index=prefix_index_hg38, |
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refname="Hg38",dir_index=dir_index_hg38,prefix_index=prefix_index_hg38, |
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max_mismatch_allowed=max_mismatch_allowed, |
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max_mismatch_allowed=max_mismatch_allowed, |
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docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size |
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docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size |