@@ -114,7 +114,7 @@ workflow {{ project_name }} { | |||
call Align.AlignToBothStrand as Align2Hg38 { | |||
input: | |||
sample_id=sample_id, | |||
in_fastq=Align2piRNA.out_fastq, | |||
in_fastq=ReadFilter.out_fastq, | |||
refname="Hg38",dir_index=dir_index_hg38,prefix_index=prefix_index_hg38, | |||
max_mismatch_allowed=max_mismatch_allowed, | |||
docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size |