1 fichiers modifiés avec 2 ajouts et 2 suppressions
+ 2
- 2
workflow.wdl
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| call Align.AlignToSenseOnly as Align2RNA { | call Align.AlignToSenseOnly as Align2RNA { | ||||
| input: | input: | ||||
| sample_id=sample_id, | sample_id=sample_id, | ||||
| in_fastq=Align2tRNA.out_fastq, | |||||
| in_fastq=ReadFilter.out_fastq, | |||||
| refname="RNA",dir_index=dir_index_RNA,prefix_index=prefix_index_RNA, | refname="RNA",dir_index=dir_index_RNA,prefix_index=prefix_index_RNA, | ||||
| max_mismatch_allowed=max_mismatch_allowed, | max_mismatch_allowed=max_mismatch_allowed, | ||||
| docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size | docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size | ||||
| call Align.AlignToBothStrand as Align2RN7 { | call Align.AlignToBothStrand as Align2RN7 { | ||||
| input: | input: | ||||
| sample_id=sample_id, | sample_id=sample_id, | ||||
| in_fastq=Align2piRNA.out_fastq, | |||||
| in_fastq=ReadFilter.out_fastq, | |||||
| refname="Hg38",dir_index=dir_index_hg38,prefix_index=prefix_index_hg38, | refname="Hg38",dir_index=dir_index_hg38,prefix_index=prefix_index_hg38, | ||||
| max_mismatch_allowed=max_mismatch_allowed, | max_mismatch_allowed=max_mismatch_allowed, | ||||
| docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size | docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size |
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