更新 'workflow.wdl'

workflow.wdl

@@ -71,7 +71,7 @@ workflow {{ project_name }} {
     call Align.AlignToSenseOnly as Align2RNA {
         input:
             sample_id=sample_id,
-            in_fastq=Align2tRNA.out_fastq,
+            in_fastq=ReadFilter.out_fastq,
             refname="RNA",dir_index=dir_index_RNA,prefix_index=prefix_index_RNA,
             max_mismatch_allowed=max_mismatch_allowed,
             docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size
@@ -80,7 +80,7 @@ workflow {{ project_name }} {
     call Align.AlignToBothStrand as Align2RN7 {
         input:
             sample_id=sample_id,
-            in_fastq=Align2piRNA.out_fastq,
+            in_fastq=ReadFilter.out_fastq,
             refname="Hg38",dir_index=dir_index_hg38,prefix_index=prefix_index_hg38,
             max_mismatch_allowed=max_mismatch_allowed,
             docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size