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workflow.wdl
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| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| String sample_id | String sample_id | ||||
| File bam_file | File bam_file | ||||
| String bam_id=basename(bam_file) | |||||
| File reference_gtf_file | File reference_gtf_file | ||||
| input: | input: | ||||
| reference_gtf_file = reference_gtf_file, | reference_gtf_file = reference_gtf_file, | ||||
| sample_id = sample_id, | sample_id = sample_id, | ||||
| bam_file = samtools.bam, | |||||
| bam = samtools.bam, | |||||
| docker = spladder_docker, | docker = spladder_docker, | ||||
| cluster = spladder_cluster, | cluster = spladder_cluster, | ||||
| disk_size = disk_size | disk_size = disk_size |
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