1 changed files with 2 additions and 2 deletions
+ 2
- 2
tasks/spladder.wdl
View File
| @@ -1,6 +1,6 @@ | |||
| task spladder { | |||
| String sample_id | |||
| File bam_file | |||
| File bam | |||
| File reference_gtf_file | |||
| @@ -16,7 +16,7 @@ task spladder { | |||
| mkdir -p ${sample_id}/spladder_out | |||
| spladder build --bams ${bam_file} \ | |||
| spladder build --bams ${bam} \ | |||
| --annotation ${reference_gtf_file} \ | |||
| --outdir ${sample_id}/spladder_out | |||
Loading…