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workflow.wdl
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| @@ -5,7 +5,6 @@ import "./tasks/spladder.wdl" as spladder | |||
| workflow {{ project_name }} { | |||
| String sample_id | |||
| File bam_file | |||
| String bam_id=basename(bam_file) | |||
| File reference_gtf_file | |||
| @@ -27,7 +26,7 @@ workflow {{ project_name }} { | |||
| input: | |||
| reference_gtf_file = reference_gtf_file, | |||
| sample_id = sample_id, | |||
| bam_file = samtools.bam, | |||
| bam = samtools.bam, | |||
| docker = spladder_docker, | |||
| cluster = spladder_cluster, | |||
| disk_size = disk_size | |||
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