1 changed files with 6 additions and 7 deletions
+ 6
- 7
workflow.wdl
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| @@ -1,25 +1,24 @@ | |||
| import "./tasks/spladder.wdl" as spladder | |||
| import "./tasks/spladder_merge.wdl" as spladder_merge | |||
| workflow {{ project_name }} { | |||
| String sample_id | |||
| Array[File] bam | |||
| Array[File] bai | |||
| Array[File] pickle | |||
| File bam | |||
| File pickle | |||
| File reference_gtf_file | |||
| File samples | |||
| String spladder_docker | |||
| String spladder_cluster | |||
| String disk_size | |||
| call spladder.spladder as spladder { | |||
| call spladder_merge.spladder_merge as spladder_merge { | |||
| input: | |||
| reference_gtf_file=reference_gtf_file, | |||
| sample_id=sample_id, | |||
| bam=bam, | |||
| bai=bai, | |||
| pickle=pickle, | |||
| samples=samples, | |||
| docker=spladder_docker, | |||
| cluster=spladder_cluster, | |||
| disk_size=disk_size | |||
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