1 changed files with 6 additions and 7 deletions
+ 6
- 7
workflow.wdl
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| import "./tasks/spladder.wdl" as spladder | |||||
| import "./tasks/spladder_merge.wdl" as spladder_merge | |||||
| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| String sample_id | String sample_id | ||||
| Array[File] bam | |||||
| Array[File] bai | |||||
| Array[File] pickle | |||||
| File bam | |||||
| File pickle | |||||
| File reference_gtf_file | File reference_gtf_file | ||||
| File samples | |||||
| String spladder_docker | String spladder_docker | ||||
| String spladder_cluster | String spladder_cluster | ||||
| String disk_size | String disk_size | ||||
| call spladder.spladder as spladder { | |||||
| call spladder_merge.spladder_merge as spladder_merge { | |||||
| input: | input: | ||||
| reference_gtf_file=reference_gtf_file, | reference_gtf_file=reference_gtf_file, | ||||
| sample_id=sample_id, | sample_id=sample_id, | ||||
| bam=bam, | bam=bam, | ||||
| bai=bai, | |||||
| pickle=pickle, | pickle=pickle, | ||||
| samples=samples, | |||||
| docker=spladder_docker, | docker=spladder_docker, | ||||
| cluster=spladder_cluster, | cluster=spladder_cluster, | ||||
| disk_size=disk_size | disk_size=disk_size |
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