更新 'workflow.wdl'

workflow.wdl

@@ -1,25 +1,24 @@
-import "./tasks/spladder.wdl" as spladder
+import "./tasks/spladder_merge.wdl" as spladder_merge
 
 
 workflow {{ project_name }} {
     String sample_id
-    Array[File] bam
-    Array[File] bai
-    Array[File] pickle
+    File bam
+    File pickle
     File reference_gtf_file
-    
+    File samples
 
     String spladder_docker
     String spladder_cluster
     String disk_size	
 
-	call spladder.spladder as spladder {
+	call spladder_merge.spladder_merge as spladder_merge {
 		input:
 		reference_gtf_file=reference_gtf_file,
 		sample_id=sample_id,
 		bam=bam,
-		bai=bai,
 		pickle=pickle,
+		samples=samples,
 		docker=spladder_docker,
 		cluster=spladder_cluster,
 		disk_size=disk_size