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更新 'tasks/spladder_merge.wdl'

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chenqingwang pirms 3 gadiem
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2efdb3ae82
1 mainītis faili ar 2 papildinājumiem un 2 dzēšanām
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      tasks/spladder_merge.wdl

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tasks/spladder_merge.wdl Parādīt failu



mkdir -p ${sample_id}/spladder_out/spladder mkdir -p ${sample_id}/spladder_out/spladder
ln -s ${bam}/*.bam$ ./
ln -s ${bam}/*.bam ./
ls ./ | grep bam$ > alignment.txt ls ./ | grep bam$ > alignment.txt
ln -s ${bam}/*.bai$ ./
ln -s ${bam}/*.bai ./
ls ./ | grep bai$ > alignment_bai.txt ls ./ | grep bai$ > alignment_bai.txt
ln -s ${pickle}/*.pickle ${sample_id}/spladder_out/spladder/ ln -s ${pickle}/*.pickle ${sample_id}/spladder_out/spladder/
ls ${sample_id}/spladder_out/spladder/ >> pickle.txt ls ${sample_id}/spladder_out/spladder/ >> pickle.txt

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