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更新 'tasks/fusioncatcher.wdl'

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biochenglinliu 4 years ago
parent
commit
ca76e5479f
1 changed files with 4 additions and 4 deletions
  1. +4
    -4
      tasks/fusioncatcher.wdl

+ 4
- 4
tasks/fusioncatcher.wdl View File

@@ -12,10 +12,10 @@ task fusioncatcher{
set -o pipefail
set -e
mkdir -p ${sample_id}/input
mkdir -p ${sample_id}/output
cp ${fastq1} ${sample_id}/input
cp ${fastq2} ${sample_id}/input
mkdir -p ${sample_id}/input/
mkdir -p ${sample_id}/output/
cp ${fastq1} ${sample_id}/input/
cp ${fastq2} ${sample_id}/input/

/software/fusioncatcher/bin/fusioncatcher \
-d ${database_dir} \

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