1 changed files with 4 additions and 4 deletions
+ 4
- 4
tasks/fusioncatcher.wdl
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| set -o pipefail | set -o pipefail | ||||
| set -e | set -e | ||||
| mkdir -p ${sample_id}/input | |||||
| mkdir -p ${sample_id}/output | |||||
| cp ${fastq1} ${sample_id}/input | |||||
| cp ${fastq2} ${sample_id}/input | |||||
| mkdir -p ${sample_id}/input/ | |||||
| mkdir -p ${sample_id}/output/ | |||||
| cp ${fastq1} ${sample_id}/input/ | |||||
| cp ${fastq2} ${sample_id}/input/ | |||||
| /software/fusioncatcher/bin/fusioncatcher \ | /software/fusioncatcher/bin/fusioncatcher \ | ||||
| -d ${database_dir} \ | -d ${database_dir} \ |
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