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tasks/battenberg.wdl
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| cp ${normal_bam} ./${normal_id}.bam | cp ${normal_bam} ./${normal_id}.bam | ||||
| cp ${tumor_bam} ./${sample_id}.bam | cp ${tumor_bam} ./${sample_id}.bam | ||||
| /opt/conda/envs/batternberg/bin/samtools view -h -@ 16 -o ${normal_id}.sorted.deduped.sam ./${normal_id}.bam | |||||
| /opt/conda/envs/samtools/bin/samtools view -h -@ 16 -o ${normal_id}.sorted.deduped.sam ./${normal_id}.bam | |||||
| >>> | >>> | ||||
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