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tasks/TNseq.wdl
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| output { | output { | ||||
| File TNseq_vcf = "${sample}.TNseq.TN.vcf" | File TNseq_vcf = "${sample}.TNseq.TN.vcf" | ||||
| File TNseq_vcf_index = "${sample}.TNseq.TN.vcf.idx" | File TNseq_vcf_index = "${sample}.TNseq.TN.vcf.idx" | ||||
| File TNseq_tmp_vcf = "${sample}.TNseq.TN.tmp.vcf" | |||||
| File TNseq_tmp_vcf_index = "${sample}.TNseq.TN.tmp.vcf.idx" | |||||
| File contamination = "${sample}.contamination" | File contamination = "${sample}.contamination" | ||||
| File contamination_segments = "${sample}.contamination.segments" | File contamination_segments = "${sample}.contamination.segments" | ||||
| File orientation = "${sample}.orientation" | File orientation = "${sample}.orientation" |
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