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| ### Variant Calling | |||
| This APP developed for germline and somatic short variant discovery (SNVs + Indels). | |||
| **Supported callers** | |||
| **Supported Callers** | |||
| * All callers are **not activated by default**, which means the default setting is `false`. | |||
| * You need to manually set the caller to `true` in the submitted sample.csv. | |||
| @@ -16,7 +16,7 @@ This APP developed for germline and somatic short variant discovery (SNVs + Inde | |||
| * VarScan | |||
| * TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated) | |||
| **Accepted data** | |||
| **Accepted Data** | |||
| * TN matched WES for somatic variant calling | |||
| * TN matched WGS for somatic variant calling | |||
| * Normal-only WES for germline variant calling | |||
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