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| ### Variant Calling | ### Variant Calling | ||||
| This APP developed for germline and somatic short variant discovery (SNVs + Indels). | This APP developed for germline and somatic short variant discovery (SNVs + Indels). | ||||
| **Supported callers** | |||||
| **Supported Callers** | |||||
| * All callers are **not activated by default**, which means the default setting is `false`. | * All callers are **not activated by default**, which means the default setting is `false`. | ||||
| * You need to manually set the caller to `true` in the submitted sample.csv. | * You need to manually set the caller to `true` in the submitted sample.csv. | ||||
| * VarScan | * VarScan | ||||
| * TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated) | * TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated) | ||||
| **Accepted data** | |||||
| **Accepted Data** | |||||
| * TN matched WES for somatic variant calling | * TN matched WES for somatic variant calling | ||||
| * TN matched WGS for somatic variant calling | * TN matched WGS for somatic variant calling | ||||
| * Normal-only WES for germline variant calling | * Normal-only WES for germline variant calling |
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